Summary: [193/in vivo/5xFAD Alzheimer model (APP overexpression)/Mouse/Hippocampus/Glia]

(please login to be able to edit)

Subject 🐁

group: Slide16_F_5xFAD
species: mouse
strain: B6SJL-Tg(APPSwFlLon,PSEN1*M146L*L286V)6799Vas/Mmjax
gender: Female
development stage: adult
age: between (42) and (56) Days
weight: between ? and ? grams

Anatomy 🧠

brain region: hippocampus
sub-brain region: Not inserted!
sub-sub-brain region:
Not inserted!
cell type: glia
sub-cell type: microglia
sub-sub cell type: Not inserted!

Experiment and Reconstruction 🌡

experimental protocol: in vivo
experimental condition: 5xFAD Alzheimer model (APP overexpression)
stain: Iba1* (New!)
slice thickness: 35
slicing direction: coronal
tissue shrinkage: Not reported (? XY:? Z:?)
shrinkage corrected: Not inserted!
reconstruction software: QuPath* (New!)
objective type: dry
objective magnification: 40

Data ⛁

number of data files: 193
numerical units: micrometer
pixel size (if pixel): Not inserted or not Pixel!
format of data files: FIJI.traces

Neuron Description ⚛

Available features in the reconstruction data!
soma: Available
axon: Not Available
dendrites: Not Available
Neurites: Available - Moderate
Processes: Not Available

Morphological Attributes ⚖

dimension: 2D
angles: Yes
diameter: No

Contributor Information ☏

archive name: Early_5xFAD_microglia
acknowledgements:

Sharma Lab

La Jolla Institute for Immunology

9420 Athena Circle, San Diego, 92037
(New!)
notes: Since these are microglia, I'm uncertain how to answer the completeness categories, which seem designed for neurons. Generally, we captured as much of the glia outline as possible, but I cannot guarantee we got all of it.

Entries* indicate items which are not available in the dataset and are added manually.

Entries indicate items which are left blank.

This group belongs to the dataset: Early_5xFAD_microglia